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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
482
ATAC-seq
173
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1740
Transcription
1646
DNA binding
743
DNA accessibility
84
DNA methylation
26
3D chromatin structure
1
DNA sequencing
Date released
152
June, 2019
100
May, 2020
99
May, 2022
82
August, 2021
70
February, 2023
41
February, 2021
34
May, 2021
27
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
July, 2019
3
September, 2020
2
November, 2020
1
August, 2022
Available data
403
bed narrowPeak
335
bam
304
bigWig
201
bigBed narrowPeak
170
bed bed3+
169
bed broadPeak
167
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
742
Homo sapiens
Biosample type
399
tissue
278
primary cell
43
in vitro differentiated cells
23
cell line
Organ
173
pancreas
163
kidney
123
epithelium
heart
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
607
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
403
hg19
353
GRCh38
Lab
473
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
44
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
heart
vasculature
BIOSAMPLE
ASSAY
743 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
liver
20
2
retina
15
3
muscle of arm
17
+ See 51 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 52 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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