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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ATAC-seq
130
DNase-seq
4
FAIRE-seq
Assay category
1526
DNA binding
1394
Transcription
309
DNA accessibility
18
DNA methylation
Date released
109
June, 2019
45
May, 2020
26
November, 2019
18
February, 2021
18
May, 2022
14
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
August, 2021
10
November, 2018
7
July, 2019
7
October, 2017
5
September, 2017
2
November, 2020
1
March, 2019
Available data
348
bed narrowPeak
309
bam
270
bigWig
161
bigBed narrowPeak
131
bed bed3+
130
bed broadPeak
128
bigBed broadPeak
102
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
309
Homo sapiens
Biosample type
176
tissue
104
primary cell
18
in vitro differentiated cells
11
cell line
Organ
kidney
75
pancreas
44
limb
42
epithelium
42
heart
35
brain
33
musculature of body
23
vasculature
21
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
309
AMP
Genome assembly (visualization)
290
hg19
239
GRCh38
Lab
290
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
18
inconsistent ontology term
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
38
1
1
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 43 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 41 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
See all biosamples
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