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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ATAC-seq
129
DNase-seq
76
snATAC-seq
3
FAIRE-seq
Assay category
1802
DNA binding
1699
Transcription
561
DNA accessibility
93
DNA methylation
31
3D chromatin structure
1
DNA sequencing
Date released
109
June, 2019
February, 2023
100
May, 2020
99
May, 2022
49
February, 2021
34
May, 2021
27
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
306
bam
280
bed narrowPeak
264
bigWig
158
bigBed narrowPeak
128
bed broadPeak
126
bigBed broadPeak
125
bed bed3+
102
fastq
60
zippedFastqFolder
4
bed bedgraph
2
bed bed3
2
tsv
1
txt
Organism
560
Homo sapiens
Biosample type
261
primary cell
239
tissue
31
in vitro differentiated cells
30
cell line
Organ
kidney
160
pancreas
111
epithelium
44
limb
42
heart
36
brain
35
musculature of body
29
liver
24
connective tissue
23
vasculature
21
blood vessel
18
ureter
14
artery
10
lung
9
blood
9
bodily fluid
8
bone element
8
skeleton
7
adipose tissue
5
eye
3
nerve
vein
2
spleen
1
pituitary gland
1
skin of body
Project
438
AMP
97
HPAP
16
T1D
10
LungMap
Genome assembly (visualization)
332
hg19
250
GRCh38
Lab
388
AMP-T2D consortium
97
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
36
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
kidney
vein
month_released!
February, 2023
BIOSAMPLE
ASSAY
561 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 45 more…
tissue
islet of Langerhans
57
1
5
1
liver
20
2
heart
18
muscle of arm
17
brain
14
+ See 46 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
embryonic stem cell
5
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
See all biosamples
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