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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ATAC-seq
131
DNase-seq
56
snATAC-seq
4
FAIRE-seq
Assay category
1819
DNA binding
1729
Transcription
558
DNA accessibility
52
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
109
June, 2019
101
February, 2023
100
May, 2020
May, 2022
41
February, 2021
34
May, 2021
30
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
302
bed narrowPeak
283
bam
250
bigWig
161
bigBed narrowPeak
130
bed bed3+
130
bed broadPeak
128
bigBed broadPeak
84
fastq
14
tsv
8
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
557
Homo sapiens
Biosample type
269
tissue
216
primary cell
43
in vitro differentiated cells
30
cell line
Organ
kidney
116
pancreas
84
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
34
connective tissue
34
musculature of body
32
eye
18
ureter
12
bone element
skeleton
10
lung
9
blood
9
bodily fluid
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
482
AMP
37
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
329
hg19
279
GRCh38
Lab
467
AMP-T2D consortium
37
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
28
audit script error
1
inconsistent replicate
organ_slims!
kidney
skeleton
month_released!
May, 2022
BIOSAMPLE
ASSAY
558 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
50
1
7
1
coronary artery
36
2
heart
18
retina
15
3
muscle of arm
17
+ See 39 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
pancreatic alpha cell
13
+ See 50 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
See all biosamples
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