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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ATAC-seq
123
DNase-seq
78
snATAC-seq
3
FAIRE-seq
Assay category
1726
Transcription
1720
DNA binding
614
DNA accessibility
91
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
105
June, 2019
100
May, 2020
99
May, 2022
70
February, 2023
41
February, 2021
34
May, 2021
26
November, 2019
24
October, 2019
16
January, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
5
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
293
bed narrowPeak
289
bam
258
bigWig
152
bigBed narrowPeak
123
bed bed3+
122
bed broadPeak
120
bigBed broadPeak
102
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
613
Homo sapiens
Biosample type
277
tissue
272
primary cell
43
in vitro differentiated cells
22
cell line
Organ
173
pancreas
kidney
123
epithelium
77
heart
58
vasculature
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
478
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
360
hg19
233
GRCh38
Lab
425
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
kidney
blood vessel
BIOSAMPLE
ASSAY
614 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
68
1
7
1
liver
20
2
heart
18
retina
15
3
muscle of arm
17
+ See 47 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 48 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
Panc1
1
See all biosamples
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