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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
428
ATAC-seq
127
DNase-seq
78
snATAC-seq
4
FAIRE-seq
Assay category
1814
DNA binding
1774
Transcription
637
DNA accessibility
92
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
105
June, 2019
100
May, 2020
99
May, 2022
78
February, 2023
49
February, 2021
34
May, 2021
29
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
317
bed narrowPeak
305
bam
266
bigWig
157
bigBed narrowPeak
127
bed bed3+
126
bed broadPeak
124
bigBed broadPeak
102
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
636
Homo sapiens
Biosample type
289
tissue
275
primary cell
43
in vitro differentiated cells
30
cell line
Organ
173
pancreas
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
501
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
349
hg19
283
GRCh38
Lab
448
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
kidney
eye
BIOSAMPLE
ASSAY
637 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
67
1
7
1
coronary artery
36
2
liver
20
2
heart
18
muscle of arm
17
+ See 49 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
See all biosamples
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