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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ATAC-seq
195
DNase-seq
73
snATAC-seq
2
FAIRE-seq
Assay category
1514
DNA binding
1372
Transcription
603
DNA accessibility
42
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Date released
178
June, 2019
100
May, 2020
82
August, 2021
57
February, 2023
42
May, 2022
41
February, 2021
23
October, 2019
18
May, 2021
11
May, 2023
10
April, 2020
8
January, 2021
7
November, 2018
6
August, 2017
6
July, 2019
6
November, 2019
3
January, 2018
3
October, 2017
2
November, 2020
Available data
362
bed narrowPeak
293
bam
286
bigWig
199
bigBed narrowPeak
193
bed bed3+
190
bed broadPeak
190
bigBed broadPeak
64
xls
41
fastq
21
zippedFastqFolder
12
bed bed3
12
tsv
7
bed bedgraph
4
txt
Organism
602
Homo sapiens
Biosample type
345
tissue
212
primary cell
43
in vitro differentiated cells
3
cell line
Organ
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
537
AMP
48
HPAP
10
LungMap
8
T1D
Genome assembly (visualization)
354
hg19
319
GRCh38
Lab
426
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
28
audit script error
27
inconsistent ontology term
1
inconsistent replicate
organ_slims!
pancreas
blood vessel
BIOSAMPLE
ASSAY
603 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
liver
20
2
heart
18
retina
15
3
muscle of arm
17
+ See 54 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 51 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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