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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ATAC-seq
200
DNase-seq
73
snATAC-seq
3
FAIRE-seq
Assay category
1648
DNA binding
1358
Transcription
615
DNA accessibility
43
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
179
June, 2019
100
May, 2020
82
August, 2021
61
February, 2023
42
May, 2022
41
February, 2021
28
October, 2019
18
May, 2021
11
May, 2023
10
April, 2020
8
January, 2021
8
July, 2019
7
November, 2018
6
August, 2017
6
November, 2019
3
January, 2018
3
October, 2017
2
November, 2020
Available data
379
bed narrowPeak
302
bam
295
bigWig
205
bigBed narrowPeak
198
bed bed3+
195
bed broadPeak
195
bigBed broadPeak
64
xls
41
fastq
21
zippedFastqFolder
12
tsv
8
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
614
Homo sapiens
Biosample type
345
tissue
216
primary cell
43
in vitro differentiated cells
11
cell line
Organ
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
eye
29
liver
18
ureter
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
549
AMP
48
HPAP
10
LungMap
8
T1D
Genome assembly (visualization)
362
GRCh38
331
hg19
Lab
438
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
28
audit script error
27
inconsistent ontology term
1
inconsistent replicate
organ_slims!
pancreas
bone element
eye
BIOSAMPLE
ASSAY
615 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
coronary artery
36
2
liver
20
2
heart
18
muscle of arm
17
+ See 44 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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