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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
6
DNase-seq
4
Hi-C
Assay category
552
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
3
November, 2018
2
August, 2017
2
June, 2019
1
August, 2021
1
December, 2018
1
February, 2021
1
July, 2019
1
March, 2020
1
October, 2019
Available data
28
bed narrowPeak
27
bigWig
8
bam
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
5
fastq
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
33
Homo sapiens
Biosample type
26
tissue
4
primary cell
3
cell line
Organ
182
pancreas
164
kidney
131
epithelium
80
heart
63
vasculature
61
blood vessel
49
artery
48
limb
41
musculature of body
40
brain
35
connective tissue
33
liver
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
5
vein
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
33
AMP
Genome assembly (visualization)
31
hg19
8
GRCh38
Lab
20
Karen Mohlke, UNC
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ATAC-seq
DNase-seq
Hi-C
tissue
liver
20
2
1
right lobe of liver
1
2
primary cell
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
hepatocyte
1
cell line
HepG2
1
2
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