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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
51
WGBS
11
snATAC-seq
8
DNase-seq
2
FAIRE-seq
2
RRBS
Assay category
479
Transcription
218
DNA binding
173
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
98
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
7
November, 2018
6
February, 2021
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
September, 2020
2
July, 2019
1
August, 2022
Available data
80
zippedFastqFolder
79
bam
74
bed narrowPeak
71
fastq
55
bigWig
32
bigBed narrowPeak
9
bed broadPeak
8
tsv
7
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
226
Homo sapiens
Biosample type
118
primary cell
88
tissue
20
cell line
Organ
226
pancreas
176
epithelium
167
kidney
87
heart
61
vasculature
58
blood vessel
49
artery
45
limb
41
connective tissue
41
musculature of body
39
brain
36
liver
33
eye
18
ureter
14
adipose tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
4
spleen
3
nerve
3
vein
1
pericardium
1
pituitary gland
1
skin of body
Project
109
AMP
96
HPAP
21
T1D
Genome assembly (visualization)
81
hg19
71
GRCh38
Lab
96
Klaus Kaestner, Upenn
86
AMP-T2D consortium
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
226 results
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Clear Filters
ATAC-seq
WGBS
snATAC-seq
DNase-seq
FAIRE-seq
RRBS
primary cell
pancreatic alpha cell
35
31
pancreatic beta cell
23
16
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
58
7
1
1
1
body of pancreas
4
2
4
pancreas
2
4
2
1
1
cell line
EndoC_BH1
19
Panc1
1
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