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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ATAC-seq
12
DNase-seq
11
snATAC-seq
2
FAIRE-seq
Assay category
498
Transcription
223
DNA binding
205
DNA accessibility
54
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
40
February, 2023
20
November, 2019
16
May, 2021
14
September, 2018
8
January, 2021
8
June, 2019
7
August, 2020
5
August, 2017
5
October, 2017
5
October, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
November, 2018
3
September, 2020
1
August, 2022
Available data
105
bed narrowPeak
79
bam
61
fastq
55
bigWig
39
zippedFastqFolder
36
bigBed narrowPeak
13
bed broadPeak
11
bed bed3+
11
bigBed broadPeak
2
tsv
Organism
205
Homo sapiens
Biosample type
113
tissue
72
primary cell
20
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
135
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
110
hg19
71
GRCh38
Lab
112
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
205 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
59
1
7
1
retina
15
3
pigmented layer of retina
12
body of pancreas
4
4
pancreas
2
4
1
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
retinal pigment epithelial cell
1
cell line
EndoC_BH1
19
Panc1
1
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