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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ATAC-seq
14
DNase-seq
11
snATAC-seq
2
FAIRE-seq
Assay category
770
DNA binding
672
Transcription
202
DNA accessibility
60
DNA methylation
13
3D chromatin structure
1
DNA sequencing
Date released
77
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2017
7
August, 2020
6
June, 2019
6
November, 2018
5
October, 2017
5
October, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
September, 2020
1
August, 2022
1
February, 2021
Available data
102
bed narrowPeak
83
bam
77
bigWig
65
fastq
39
zippedFastqFolder
38
bigBed narrowPeak
14
bed broadPeak
12
bed bed3+
12
bigBed broadPeak
2
tsv
1
bed bed3
Organism
202
Homo sapiens
Biosample type
107
tissue
74
primary cell
21
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
132
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
107
hg19
75
GRCh38
Lab
89
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
202 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
58
1
7
1
liver
20
2
body of pancreas
4
4
pancreas
2
4
1
right lobe of liver
1
2
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
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cell line
EndoC_BH1
19
HepG2
1
Panc1
1
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