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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ATAC-seq
203
DNase-seq
83
snATAC-seq
5
FAIRE-seq
Assay category
1671
DNA binding
1433
Transcription
797
DNA accessibility
90
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
181
June, 2019
100
May, 2020
99
May, 2022
95
February, 2023
80
August, 2021
44
February, 2021
34
May, 2021
30
October, 2019
25
November, 2019
16
January, 2021
14
September, 2018
11
May, 2023
9
April, 2020
9
August, 2017
9
November, 2018
8
July, 2019
7
August, 2020
7
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
September, 2020
2
January, 2018
1
August, 2022
Available data
475
bed narrowPeak
375
bam
332
bigWig
228
bigBed narrowPeak
199
bed broadPeak
197
bed bed3+
197
bigBed broadPeak
98
fastq
64
xls
60
zippedFastqFolder
14
tsv
6
bed bed3
4
txt
3
bed bedgraph
1
tar
Organism
797
Homo sapiens
Biosample type
461
tissue
280
primary cell
31
cell line
25
in vitro differentiated cells
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
9
blood
9
bodily fluid
9
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
662
AMP
97
HPAP
29
T1D
9
LungMap
Genome assembly (visualization)
427
GRCh38
420
hg19
Lab
530
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
797 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 56 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 54 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
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