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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
29
ATAC-seq
2
DNase-seq
Assay category
484
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
25
October, 2019
18
August, 2021
18
January, 2019
17
February, 2021
17
May, 2021
14
November, 2019
3
March, 2020
1
January, 2018
Available data
477
bam
420
fastq
416
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
tsv
Organism
515
Homo sapiens
Biosample type
1337
tissue
567
primary cell
515
cell line
241
in vitro differentiated cells
3
stem cell
Organ
379
liver
61
blood
61
bodily fluid
48
pancreas
35
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
11
kidney
Project
513
AMP
2
T1D
Genome assembly (visualization)
422
hg19
358
GRCh38
Lab
497
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
44
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
515 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
378
1
GM12878
60
1
EndoC_BH1
15
19
Panc1
13
1
smooth muscle cell of the coronary artery
6
8
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