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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
Assay category
181
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
0
DNA methylation
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
61
August, 2017
43
May, 2021
34
December, 2017
22
February, 2018
21
August, 2021
Available data
129
bam
103
fastq
98
bigWig
93
bed narrowPeak
40
tagAlign
14
bigBed narrowPeak
11
bed bed3+
Organism
181
Homo sapiens
Biosample type
939
tissue
459
cell line
332
primary cell
181
in vitro differentiated cells
1
stem cell
Organ
61
connective tissue
21
epithelium
19
embryo
15
liver
3
pancreas
Project
181
AMP
Genome assembly (visualization)
103
GRCh38
102
hg19
Lab
144
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
in vitro differentiated cells
adipocyte
61
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
16
hepatocyte
15
primitive gut cell
6
definitive endodermal cell
4
Hepatic endoderm
3
Posterior foregut
3
cardiomyocytes
3
endocrine cell
3
pancreatic PP cell
3
posterior foregut
3
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