Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
Assay category
1227
Transcription
880
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
67
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
40
May, 2024
21
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
695
bam
588
bigWig
568
bed narrowPeak
350
bigBed narrowPeak
238
tagAlign
193
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
873
Homo sapiens
Biosample type
880
tissue
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
128
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
878
AMP
2
T1D
Genome assembly (visualization)
563
GRCh38
502
hg19
Lab
840
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
biosample_type!
cell line
BIOSAMPLE
ASSAY
880 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
118
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 103 more…
See all biosamples
Download