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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
860
ChIP-seq
Assay category
1227
Transcription
860
DNA binding
468
DNA accessibility
36
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
177
control
61
transcription factor
28
RNA binding protein
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
40
May, 2024
21
December, 2017
15
October, 2017
6
September, 2017
4
November, 2018
2
March, 2020
Available data
675
bam
576
bigWig
556
bed narrowPeak
338
bigBed narrowPeak
238
tagAlign
173
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
853
Homo sapiens
Biosample type
860
tissue
483
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
128
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
858
AMP
2
T1D
Genome assembly (visualization)
551
GRCh38
490
hg19
Lab
820
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
organ_slims!
spleen
BIOSAMPLE
ASSAY
860 results
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Clear Filters
ChIP-seq
tissue
liver
118
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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