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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
Assay category
201
Transcription
125
DNA binding
123
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
90
histone
90
histone modification
47
narrow histone mark
43
broad histone mark
26
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
August, 2021
4
May, 2021
1
March, 2020
Available data
125
bam
98
bigWig
94
bed narrowPeak
72
fastq
36
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
3
tagAlign
Organism
125
Homo sapiens
Biosample type
88
primary cell
22
in vitro differentiated cells
15
cell line
Organ
503
liver
218
brain
218
pancreas
153
connective tissue
134
heart
125
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
59
blood
59
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
123
AMP
2
T1D
Genome assembly (visualization)
98
hg19
94
GRCh38
Lab
125
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
audit.ERROR.category!
inconsistent control
month_released!
August, 2021
BIOSAMPLE
ASSAY
125 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 5 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
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