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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
Assay category
138
DNA binding
19
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
80
control
52
transcription factor
7
RNA binding protein
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
18
August, 2021
10
October, 2019
4
November, 2018
3
February, 2021
3
January, 2019
2
November, 2019
Available data
119
bam
105
fastq
65
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
Organism
138
Homo sapiens
Biosample type
317
tissue
138
cell line
78
in vitro differentiated cells
72
primary cell
Organ
117
liver
9
pancreas
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
Project
138
AMP
Genome assembly (visualization)
407
hg19
GRCh38
Lab
120
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
cell line
HepG2
117
Panc1
7
GM12878
6
EndoC_BH1
2
smooth muscle cell of the coronary artery
2
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