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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
138
Transcription
86
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
30
August, 2017
22
May, 2021
19
December, 2017
8
February, 2018
7
August, 2021
Available data
67
bam
55
fastq
37
bigWig
32
bed narrowPeak
14
tagAlign
11
bed bed3+
2
bigBed narrowPeak
Organism
86
Homo sapiens
Biosample type
446
cell line
274
tissue
86
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
30
connective tissue
10
embryo
7
epithelium
3
liver
2
pancreas
Project
86
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
69
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
in vitro differentiated cells
adipocyte
30
embryonic stem cell
18
pancreatic endoderm
8
neural progenitor cell
7
definitive endodermal cell
4
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