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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
Assay category
436
Transcription
288
DNA accessibility
235
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
41
August, 2017
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
203
bigWig
198
bam
194
bed narrowPeak
100
tagAlign
57
bigBed narrowPeak
50
fastq
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
235
Homo sapiens
Biosample type
841
tissue
471
cell line
235
primary cell
192
in vitro differentiated cells
3
stem cell
Organ
71
epithelium
26
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
151
AMP
84
T1D
Genome assembly (visualization)
203
hg19
163
GRCh38
Lab
118
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
pancreatic alpha cell
13
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