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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
Assay category
574
Transcription
477
DNA binding
331
DNA accessibility
58
DNA methylation
14
3D chromatin structure
Target of assay
349
histone
349
histone modification
178
broad histone mark
170
narrow histone mark
69
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
164
May, 2021
120
August, 2017
43
December, 2017
32
September, 2018
31
June, 2019
25
August, 2021
24
February, 2018
24
October, 2019
9
November, 2017
5
May, 2019
Available data
388
bam
362
bigWig
336
bed narrowPeak
214
fastq
140
tagAlign
71
bigBed narrowPeak
22
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
Organism
477
Homo sapiens
Biosample type
867
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
114
epithelium
79
connective tissue
73
pancreas
23
vasculature
22
embryo
20
blood vessel
19
liver
17
vein
15
kidney
10
musculature of body
9
brain
5
heart
3
eye
Project
393
AMP
84
T1D
Genome assembly (visualization)
366
hg19
327
GRCh38
Lab
323
AMP-T2D consortium
154
Kyle Gaulton, UCSD
Audit category:
32
inconsistent ontology term
Audit category:
50
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
477 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
+ See 18 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
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