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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
Assay category
273
Transcription
197
DNA accessibility
187
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
27
August, 2017
25
June, 2019
11
September, 2018
3
November, 2017
Available data
177
bigWig
160
bed narrowPeak
150
bam
96
tagAlign
41
fastq
35
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
Organism
187
Homo sapiens
Biosample type
867
tissue
469
cell line
187
primary cell
176
in vitro differentiated cells
3
stem cell
Organ
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
103
AMP
84
T1D
Genome assembly (visualization)
177
hg19
141
GRCh38
Lab
117
Kyle Gaulton, UCSD
70
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
skeletal muscle myoblast
15
skeletal muscle satellite cell
8
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