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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
Assay category
220
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
75
August, 2017
58
October, 2018
48
December, 2017
10
November, 2018
9
October, 2017
7
December, 2018
7
January, 2019
6
September, 2017
Available data
722
bam
575
bigWig
555
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
420
cell line
220
tissue
120
in vitro differentiated cells
94
primary cell
3
stem cell
Organ
77
liver
77
pancreas
37
adipose tissue
37
connective tissue
20
spleen
9
brain
Project
220
AMP
Genome assembly (visualization)
155
GRCh38
155
hg19
Lab
220
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
220 results
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ChIP-seq
tissue
liver
67
body of pancreas
33
islet of Langerhans
28
spleen
20
pancreas
16
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
right lobe of liver
10
brain
9
adipose tissue
2
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