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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
737
ChIP-seq
Assay category
737
DNA binding
356
Transcription
101
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
165
histone modification
164
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
324
November, 2017
128
August, 2017
70
November, 2018
58
October, 2018
51
December, 2017
34
December, 2018
32
September, 2018
25
January, 2019
9
October, 2017
6
September, 2017
Available data
1432
bam
1235
bigWig
1175
bed narrowPeak
787
bigBed narrowPeak
737
fastq
358
tagAlign
114
bed broadPeak
79
bigBed broadPeak
34
bed bed3+
3
tar
1
tagAlign bed3+
Organism
730
Homo sapiens
Biosample type
420
cell line
220
tissue
in vitro differentiated cells
94
primary cell
3
stem cell
Organ
437
liver
147
pancreas
60
blood
60
bodily fluid
53
epithelium
37
adipose tissue
37
connective tissue
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
737
AMP
Genome assembly (visualization)
602
hg19
550
GRCh38
Lab
737
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
737 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
GM12878
60
tissue
liver
67
body of pancreas
33
islet of Langerhans
28
spleen
20
pancreas
16
+ See 6 more…
primary cell
pancreatic endocrine cell
23
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
+ See 4 more…
stem cell
hESC
3
See all biosamples
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