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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
Assay category
338
Transcription
280
DNA accessibility
162
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
53
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
Available data
158
bam
130
bigWig
112
bed narrowPeak
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
3
bed bed3+
Organism
162
Homo sapiens
Biosample type
867
tissue
484
cell line
162
primary cell
161
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
162
AMP
Genome assembly (visualization)
130
hg19
123
GRCh38
Lab
162
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
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