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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
206
DNA accessibility
75
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
August, 2017
3
October, 2017
2
October, 2019
Available data
1397
bam
1179
bigWig
1153
bed narrowPeak
769
bigBed narrowPeak
676
fastq
313
tagAlign
75
bed broadPeak
66
bigBed broadPeak
20
bed bed3+
3
tar
1
tagAlign bed3+
Organism
75
Homo sapiens
Biosample type
58
cell line
9
tissue
8
primary cell
Organ
58
liver
15
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
75
AMP
Genome assembly (visualization)
75
hg19
58
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
cell line
HepG2
58
tissue
brain
3
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
substantia nigra
1
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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