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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ChIP-seq
Assay category
471
DNA binding
114
Transcription
30
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
360
transcription factor
89
recombinant protein
78
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
452
bam
420
fastq
400
bigWig
381
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
471
Homo sapiens
Biosample type
907
tissue
471
cell line
248
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
60
blood
60
bodily fluid
15
pancreas
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
2
epithelium
Project
469
AMP
2
T1D
Genome assembly (visualization)
396
hg19
335
GRCh38
Lab
453
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
November, 2019
BIOSAMPLE
ASSAY
471 results
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ChIP-seq
cell line
HepG2
378
GM12878
60
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
EndoC_BH1
2
iPSC derived cell line
2
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