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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
Assay category
436
Transcription
264
DNA accessibility
248
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
224
bigWig
211
bam
203
bed narrowPeak
100
tagAlign
94
fastq
34
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
248
Homo sapiens
Biosample type
907
tissue
484
cell line
248
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
86
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
12
kidney
9
brain
4
liver
Project
164
AMP
84
T1D
Genome assembly (visualization)
224
hg19
184
GRCh38
Lab
131
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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