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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
Assay category
252
Transcription
211
DNA binding
90
DNA accessibility
Target of assay
184
histone
184
histone modification
92
broad histone mark
92
narrow histone mark
21
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
84
May, 2021
53
August, 2017
32
September, 2018
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
224
bigWig
211
bam
203
bed narrowPeak
100
tagAlign
94
fastq
34
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
211
Homo sapiens
Biosample type
722
tissue
465
cell line
211
primary cell
146
in vitro differentiated cells
3
stem cell
Organ
86
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
12
kidney
9
brain
4
liver
Project
127
AMP
84
T1D
Genome assembly (visualization)
191
hg19
184
GRCh38
Lab
127
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
primary cell
monocyte
84
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
pancreatic alpha cell
13
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