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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
794
ChIP-seq
Assay category
828
Transcription
794
DNA binding
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
561
histone modification
560
histone
297
narrow histone mark
263
broad histone mark
161
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
126
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
51
October, 2018
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
685
bam
556
bigWig
548
bed narrowPeak
371
bigBed narrowPeak
230
tagAlign
183
fastq
34
bed broadPeak
24
bed bed3+
1
tagAlign bed3+
Organism
787
Homo sapiens
Biosample type
794
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
117
pancreas
83
heart
74
connective tissue
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
792
AMP
2
T1D
Genome assembly (visualization)
532
GRCh38
510
hg19
Lab
794
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
794 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
body of pancreas
35
heart left ventricle
35
tibial nerve
35
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