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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
Assay category
434
Transcription
283
DNA accessibility
259
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
31
June, 2019
7
October, 2019
6
November, 2017
5
May, 2019
4
August, 2021
Available data
232
bigWig
222
bam
214
bed narrowPeak
100
tagAlign
91
fastq
45
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
3
bed bed3+
Organism
259
Homo sapiens
Biosample type
794
tissue
478
cell line
259
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
175
AMP
84
T1D
Genome assembly (visualization)
232
hg19
195
GRCh38
Lab
142
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
259 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
skeletal muscle myoblast
15
pancreatic alpha cell
13
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