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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
658
ChIP-seq
Assay category
1206
Transcription
658
DNA binding
438
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
409
histone modification
408
histone
213
broad histone mark
195
narrow histone mark
160
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
111
October, 2019
87
May, 2019
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
535
bam
412
bigWig
391
bed narrowPeak
289
bigBed narrowPeak
211
fastq
120
tagAlign
28
bed bed3+
26
bed broadPeak
Organism
651
Homo sapiens
Biosample type
658
tissue
484
cell line
270
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
brain
155
liver
117
pancreas
83
heart
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
656
AMP
2
T1D
Genome assembly (visualization)
415
hg19
385
GRCh38
Lab
658
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
658 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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