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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
Assay category
481
Transcription
131
DNA binding
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
59
histone
59
histone modification
40
transcription factor
32
broad histone mark
32
control
26
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
95
August, 2017
23
October, 2018
12
June, 2019
1
October, 2019
Available data
102
bam
90
fastq
75
bigWig
58
bed narrowPeak
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
131
Homo sapiens
Biosample type
66
tissue
53
in vitro differentiated cells
12
primary cell
Organ
466
liver
199
pancreas
131
connective tissue
128
heart
122
epithelium
100
brain
96
vasculature
93
blood vessel
66
limb
65
adipose tissue
60
blood
60
bodily fluid
52
kidney
35
nerve
28
artery
24
musculature of body
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
Project
131
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
131
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
28
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
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in vitro differentiated cells
adipocyte
53
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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