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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
Assay category
180
Transcription
116
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
74
histone
74
histone modification
41
broad histone mark
33
narrow histone mark
27
control
15
transcription factor
6
RNA binding protein
Date released
57
April, 2019
21
May, 2019
13
December, 2017
9
February, 2018
6
February, 2021
5
June, 2019
5
October, 2019
Available data
115
bam
88
bed narrowPeak
88
bigWig
64
bigBed narrowPeak
22
fastq
6
tagAlign
3
bed bed3+
Organism
116
Homo sapiens
Biosample type
83
tissue
22
in vitro differentiated cells
6
cell line
5
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
116
AMP
Genome assembly (visualization)
89
hg19
88
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
tissue
heart left ventricle
35
heart
14
heart right ventricle
13
right atrium auricular region
10
right cardiac atrium
6
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in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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