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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
Assay category
488
Transcription
219
DNA binding
78
DNA accessibility
8
DNA methylation
5
3D chromatin structure
Target of assay
127
histone
127
histone modification
78
broad histone mark
52
control
48
narrow histone mark
40
transcription factor
10
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
60
October, 2019
23
October, 2018
12
June, 2019
7
May, 2019
Available data
167
bam
123
bigWig
106
bed narrowPeak
90
fastq
63
bigBed narrowPeak
22
tagAlign
11
bed bed3+
1
bed broadPeak
Organism
219
Homo sapiens
Biosample type
140
tissue
67
in vitro differentiated cells
12
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
219
AMP
Genome assembly (visualization)
124
hg19
122
GRCh38
Lab
219
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
tibial nerve
35
tibial artery
23
subcutaneous adipose tissue
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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