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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
Assay category
193
Transcription
139
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
66
November, 2017
31
August, 2017
23
May, 2020
13
December, 2017
5
August, 2021
1
November, 2018
Available data
510
bam
452
fastq
432
bigWig
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
139
Homo sapiens
Biosample type
71
cell line
66
tissue
1
in vitro differentiated cells
1
primary cell
Organ
139
liver
95
connective tissue
78
pancreas
66
adipose tissue
48
brain
32
epithelium
27
vasculature
26
blood vessel
20
heart
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
embryo
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
3
eye
1
lymph node
Project
139
AMP
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
135
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ChIP-seq
cell line
HepG2
71
tissue
liver
63
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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