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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
ChIP-seq
Assay category
413
DNA binding
28
DNA accessibility
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
50
December, 2017
48
November, 2018
27
May, 2020
17
August, 2017
17
August, 2021
5
October, 2019
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
413
Homo sapiens
Biosample type
307
cell line
89
tissue
14
in vitro differentiated cells
3
primary cell
Organ
413
liver
170
brain
140
pancreas
97
epithelium
75
vasculature
74
heart
73
blood vessel
58
connective tissue
54
blood
54
bodily fluid
48
limb
39
kidney
27
musculature of body
25
artery
24
nerve
14
embryo
12
spleen
10
vein
7
adipose tissue
2
eye
1
pituitary gland
Project
413
AMP
Genome assembly (visualization)
409
hg19
359
GRCh38
Lab
399
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ChIP-seq
cell line
HepG2
307
tissue
liver
82
right lobe of liver
7
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
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