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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
Assay category
503
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
Available data
461
bam
403
fastq
384
bigWig
365
bed narrowPeak
304
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
503
Homo sapiens
Biosample type
333
cell line
151
tissue
15
in vitro differentiated cells
4
primary cell
Organ
503
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
52
kidney
45
blood
45
bodily fluid
39
musculature of body
35
nerve
34
artery
22
embryo
17
vein
14
spleen
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
503
AMP
Genome assembly (visualization)
383
hg19
312
GRCh38
Lab
485
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
503 results
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Clear Filters
ChIP-seq
cell line
HepG2
333
tissue
liver
141
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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