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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
Assay category
529
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
60
December, 2017
50
May, 2020
48
August, 2017
44
November, 2018
22
August, 2021
5
October, 2019
Available data
487
bam
429
fastq
409
bigWig
390
bed narrowPeak
329
bigBed narrowPeak
86
tagAlign
54
bed broadPeak
54
bigBed broadPeak
6
bed bed3+
3
tar
Organism
529
Homo sapiens
Biosample type
358
cell line
153
tissue
14
in vitro differentiated cells
4
primary cell
Organ
529
liver
218
brain
218
pancreas
151
connective tissue
128
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
52
kidney
50
blood
50
bodily fluid
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
529
AMP
Genome assembly (visualization)
406
hg19
339
GRCh38
Lab
511
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
529 results
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Clear Filters
ChIP-seq
cell line
HepG2
358
tissue
liver
143
right lobe of liver
10
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
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