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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
209
DNA accessibility
28
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
25
histone
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
21
August, 2017
5
December, 2017
2
September, 2017
Available data
793
bam
627
fastq
516
bigWig
469
bed narrowPeak
410
bigBed narrowPeak
77
tagAlign
49
bed broadPeak
49
bigBed broadPeak
28
bed bed3+
3
tar
Organism
28
Homo sapiens
Biosample type
16
tissue
11
in vitro differentiated cells
1
stem cell
Organ
11
connective tissue
9
pancreas
4
adipose tissue
3
liver
1
embryo
Project
28
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
28
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
4
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
tissue
islet of Langerhans
9
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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