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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
Assay category
481
Transcription
120
DNA binding
34
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
89
August, 2017
23
October, 2018
8
June, 2019
Available data
85
bam
77
fastq
57
bigWig
40
bed narrowPeak
15
tagAlign
11
bed bed3+
10
bigBed narrowPeak
Organism
120
Homo sapiens
Biosample type
61
tissue
51
in vitro differentiated cells
8
primary cell
Organ
492
liver
145
pancreas
120
connective tissue
101
brain
80
epithelium
76
vasculature
74
blood vessel
69
heart
61
adipose tissue
59
blood
59
bodily fluid
51
limb
37
kidney
28
artery
27
nerve
26
musculature of body
18
spleen
14
embryo
11
vein
2
eye
Project
120
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
120
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
25
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
1
in vitro differentiated cells
adipocyte
51
primary cell
mesenchymal stem cell
5
cardiac fibroblast
3
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