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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
WGBS
29
Hi-C
19
RRBS
1
DNAme array
Assay category
1812
DNA binding
1779
Transcription
786
DNA accessibility
95
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
33
July, 2019
15
August, 2017
8
March, 2020
7
November, 2018
6
February, 2021
3
August, 2021
3
October, 2019
3
October, 2022
1
December, 2018
1
March, 2019
1
March, 2023
1
May, 2021
1
November, 2019
Available data
41
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
22
bigWig
22
fastq
18
bam
18
hic
15
bedpe bed3+
6
tsv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
124
Homo sapiens
Biosample type
66
primary cell
54
tissue
4
cell line
Organ
61
pancreas
59
epithelium
12
heart
12
musculature of body
11
liver
8
vasculature
7
blood vessel
7
connective tissue
6
adipose tissue
5
brain
5
limb
4
kidney
2
spleen
2
vein
1
eye
1
pericardium
Project
73
AMP
50
HPAP
1
ITG
Genome assembly (visualization)
39
hg19
19
GRCh38
Lab
69
AMP-T2D consortium
50
Klaus Kaestner, Upenn
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
124 results
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WGBS
Hi-C
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 13 more…
tissue
heart left ventricle
4
1
1
liver
3
1
1
gastrocnemius medialis
4
islet of Langerhans
3
1
pancreas
2
1
1
+ See 15 more…
cell line
HepG2
1
2
Panc1
1
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