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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
ATAC-seq
212
DNase-seq
63
snATAC-seq
17
WGBS
5
FAIRE-seq
2
RRBS
1
DNAme array
Assay category
1871
DNA binding
1866
Transcription
772
DNA accessibility
34
3D chromatin structure
20
DNA methylation
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
82
August, 2021
55
February, 2021
39
May, 2022
35
May, 2021
33
October, 2019
26
November, 2019
20
August, 2017
16
January, 2021
14
September, 2018
12
July, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
407
bam
367
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
123
fastq
zippedFastqFolder
64
xls
bed bedMethyl
36
bigBed bedMethyl
20
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
791
Homo sapiens
Biosample type
483
tissue
235
primary cell
43
in vitro differentiated cells
31
cell line
Organ
163
kidney
140
pancreas
90
epithelium
79
heart
59
vasculature
57
blood vessel
49
artery
44
limb
38
connective tissue
37
brain
37
musculature of body
33
liver
32
eye
18
ureter
12
adipose tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
710
AMP
43
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
453
hg19
441
GRCh38
Lab
576
AMP-T2D consortium
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
43
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
files.file_type!
bed bedMethyl
zippedFastqFolder
BIOSAMPLE
ASSAY
792 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
WGBS
FAIRE-seq
RRBS
DNAme array
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
3
heart
18
+ See 62 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
13
6
monocyte
15
1
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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