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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
19
RRBS
1
DNAme array
Assay category
511
Transcription
469
DNA binding
447
DNA accessibility
78
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
17
July, 2019
13
August, 2017
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
21
fastq
18
bam
bigWig
6
tsv
Organism
78
Homo sapiens
Biosample type
56
primary cell
22
tissue
Organ
52
epithelium
49
pancreas
6
liver
5
musculature of body
4
adipose tissue
4
connective tissue
3
heart
3
kidney
2
brain
2
vasculature
1
blood vessel
1
eye
1
pericardium
Project
47
HPAP
31
AMP
Genome assembly (visualization)
17
hg19
Lab
47
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
bigWig
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
78 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 6 more…
tissue
liver
3
1
skeletal muscle tissue
4
heart left ventricle
2
1
subcutaneous abdominal adipose tissue
3
adipose tissue
1
+ See 7 more…
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