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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1439total RNA-seq
  • 312single cell RNA-seq
  • 18small RNA-seq
Assay category
  • 1831DNA binding
  • 1769Transcription
  • 716DNA accessibility
  • 97DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 563February, 2021
  • 190May, 2020
  • 182May, 2021
  • 180August, 2021
  • 168July, 2018
  • 89August, 2017
  • 65July, 2019
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 30October, 2019
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 9April, 2020
  • 8December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1540tsv
  • 1406bam
  • 1402bigWig
  • 295fastq
  • 68txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1769Homo sapiens
Biosample type
  • 1162tissue
  • 360primary cell
  • 134in vitro differentiated cells
  • 113cell line
Organ
  • 476connective tissue
  • 437pancreas
  • 400adipose tissue
  • 193liver
  • 165heart
  • 162epithelium
  • 75kidney
  • 67blood vessel
  • 67vasculature
  • 58artery
  • 58bone element
  • 24brain
  • 15eye
  • 14embryo
  • 9lung
  • 9musculature of body
  • 7limb
  • 5nerve
  • 1pericardium
  • 1spinal cord
Project
  • 1559AMP
  • 101HPAP
  • 100T1D
  • 9LungMap
Genome assembly (visualization)
  • 1402hg19
  • 1400GRCh38
Lab
  • 1462AMP-T2D consortium
  • 110Kyle Gaulton, UCSD
  • 101Klaus Kaestner, Upenn
  • 57Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
Audit category:
  • 137inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

1769 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue381
islet of Langerhans293
liver16711
kidney4914
bone tissue58
primary cell
Langerhans cell85
monocyte54
pancreatic alpha cell2512
pancreatic beta cell1112
pancreatic acinar cell412
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
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