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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
29
ATAC-seq
2
DNase-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
484
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
87
February, 2021
20
May, 2021
17
August, 2021
6
March, 2020
6
October, 2019
5
January, 2019
2
March, 2023
2
November, 2019
1
January, 2018
Available data
116
bam
114
tsv
109
bigWig
12
bed narrowPeak
5
fastq
2
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
144
Homo sapiens
Biosample type
1697
tissue
724
primary cell
181
in vitro differentiated cells
146
cell line
2
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
54
epithelium
53
pancreas
15
liver
8
embryo
5
kidney
1
blood
1
bodily fluid
Project
142
AMP
2
T1D
2
community
Genome assembly (visualization)
119
hg19
116
GRCh38
Lab
135
AMP-T2D consortium
9
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
55
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
146 results
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total RNA-seq
ATAC-seq
DNase-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
33
19
HepG2
14
1
H1-hESC
8
EndoC-BH1
1
1
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