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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
2
single cell RNA-seq
Assay category
198
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
28
August, 2021
22
February, 2021
4
February, 2023
2
December, 2019
2
March, 2020
2
October, 2019
Available data
273
bam
242
bigWig
135
fastq
129
tsv
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
336
Homo sapiens
Biosample type
2094
tissue
715
primary cell
599
cell line
336
in vitro differentiated cells
5
stem cell
Organ
76
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
336
AMP
Genome assembly (visualization)
247
GRCh38
246
hg19
Lab
294
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
98
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
cardiomyocytes
3
59
embryonic stem cell
40
7
neural progenitor cell
21
7
pancreatic endoderm
18
4
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