Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
361
single cell RNA-seq
18
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1673
DNA binding
789
DNA accessibility
383
Transcription
97
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
Date released
106
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
21
July, 2019
18
February, 2021
9
April, 2020
4
March, 2023
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
221
tsv
128
fastq
118
bam
118
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
379
Homo sapiens
Biosample type
190
tissue
189
primary cell
2
cell line
in vitro differentiated cells
2
stem cell
Organ
94
heart
76
pancreas
70
epithelium
65
kidney
9
lung
7
brain
7
connective tissue
6
blood vessel
6
vasculature
4
liver
3
adipose tissue
3
musculature of body
2
artery
Project
238
AMP
85
HPAP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
118
GRCh38
118
hg19
Lab
227
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
5
audit script error
assay_title!
total RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
383 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 24 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 16 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download