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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
263
single cell RNA-seq
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
443
DNA accessibility
267
Transcription
253
DNA binding
79
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
4
March, 2023
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
223
tsv
128
fastq
bam
118
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
263
Homo sapiens
Biosample type
174
tissue
87
primary cell
2
cell line
2
in vitro differentiated cells
2
stem cell
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
122
AMP
85
HPAP
47
KPMP
9
LungMap
4
community
Lab
111
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
267 results
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single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
2
cell line
EndoC-BH1
1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
stem cell
SB Ad3.1
1
1
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